Xlink Analyzer support - Proteome Discoverer Software - Xlink Analyzer support - Proteome Discoverer Software - Proteome Discoverer Software

XlinkX 3.1 Quick Start
Product Tree
Desktop Software > Proteome Discoverer Software
Ardia Platform > Software > Proteome Discoverer Software
Document Type
Quick Start Guide
Software version
3.1
  • XlinkX 3.1 Quick Start
  • License the software
  • Activate the license
  • XlinkX algorithm
  • Adding crosslinkers
  • Use predefined crosslinkers
  • Use cleavable crosslinkers
  • Use non-cleavable crosslinkers
  • Use monolinks
  • Create the crosslink workflow
  • Retain or discard FASTA file indexes
  • Create the processing workflow
  • Create the consensus workflow
  • Crosslinking nodes
  • Processing workflow nodes
  • Spectrum Selector node
  • XlinkX/PD Detect node
  • XlinkX/PD Filter node
  • XlinkX/PD Search node
  • XlinkX/PD Validator node
  • Consensus workflow nodes
  • XlinkX/PD Crosslink Grouping node
  • XlinkX/PD Crosslink Export node
  • XlinkX/PD Consensus Validator node
  • Crosslink quantification
  • Reporter ion quantification
  • Label-free quantification
  • Display results in the result file
  • Display the CSMs page
  • Display the Crosslinks page
  • Display the Crosslink Reporter Peaks page
  • Display the Decoy CSM table
  • Display decoy hits
  • FAIMS data support
  • Display the Crosslink Summary page
  • Crosslink Spectrum Match Identification Details View
  • Display fragment spectra for crosslink spectrum matches
  • MS2 Only for MS-Cleavable Linker Method
  • MS2_MS2 method
  • MS2_MS3 method
  • MS2_MS2_MS3 method
  • Exporting search results
  • PyMOL support
  • xiNET support
  • View the results on the xiNET website
  • xiView and xiNET support
  • Xlink Analyzer support
  • Trademarks

The XlinkX software supports exporting results to the ChimeraX plug in.

For information about the ChimeraX software, refer to https://www.rbvi.ucsf.edu/chimerax/.

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