As you increase the liquid flow rate from the LC system, Thermo Fisher Scientific recommends that you increase the gas flow to the ion source and the temperature of the ion transfer tube heater and the vaporizer to avoid excess fluid buildup in the ion source housing.

The recommended starting settings for the spray voltage are independent of the LC flow rate:

  • Positive polarity mode: 3500 V
  • Negative polarity mode: 2500 V

The recommended starting temperature for the ion transfer tube heater depends on whether the mass spectrometer’s ion transfer tube has an elongated bore or a narrow bore.

Recommended starting settings for the H-ESI source at various LC flow rates

LC Flow Rates (μL/min)

<=14.99

15–99.99

100–199.99

200–499.99

500–999.99

1000–3000

Sheath gas (arb)

5

25

35

50

60

75

Aux gas (arb)

2

5

7

10

15

25

Sweep gas (arb)

0

0

0

1

2

2

Vaporizer temp (°C)

20

75

275

350

350

400

Nitrogen consumption (L/min)

3.5

8

10.5

15

20

25

Ion transfer tube temp (°C)

TSQ Altis Plus,
TSQ Altis,
and TSQ Quantiva

325

325

325

325

380

380

TSQ Quantis Plus,
TSQ Quantis,
and TSQ Endura

300

300

300

325

350

375

TSQ Fortis Plus
and TSQ Fortis

275

275

300

325

325

350