The following table describes the parameters in the Fragment Match Colors and Fonts page.

Fragment Match Colors and Fonts page parameters, Options dialog box

Command or Option

Description

Loads the last saved default fragment match settings for the selected mass analyzer/activation type combination.

Saves the current fragment match settings as the default fragment match settings for the selected mass analyzer/activation type combination.

Loads the original factory fragment match settings for all mass analyzer/activation type combinations.

Ion Series

Specifies the foreground and background colors of the fragment ions found in the search.

Neutral Losses

The application automatically chooses the fragment match colors of neutral loss ions on the basis of the colors of the ion series that they belong to. The options in the Neutral Losses area are read-only.

PTMs

The application automatically chooses the fragment match colors of PTMs on the basis of the colors of the ion series that they belong to. However, you can select the background color by selecting the BG box.

Other

Specifies the foreground and background colors of any adduct ions found in the search.

Font

Specifies the font used to display annotations and views:

  • (Default) Use Subscripts: Select to use subscripts in ion names.
  • Font: Specifies the type of font used to display annotations and views.
    Default: Palatino Linotype
  • Font Size: Specifies the size of the font used to display annotations and views.
    Default: 14