The following table describes the parameters in the Options dialog box.

Options dialog box parameters

Command or Option

Description

Fragment Match Options

Opens the Fragment Match Options page. For information, see Fragment match options page parameters

Fragment Match Colors and Fonts

Opens the Fragments Match Colors and Fonts page. For parameter information, see Fragment match options page parameters.

Study Options

Opens the Study Options page. These options apply to all studies and do not need to be changed.

  • Auto Save When Starting Analysis: Determines whether to automatically save the contents of a study when you select .
  • Enable Study Variables Without Multiple Values: Determines whether you can select all study variables or only those with multiple values on the Grouping & Quantification page. Study variables with just a single value are displayed in italics.
  • Show Warning When Running a Quan Analysis Without Specified Ratios: Determines whether to display a warning if you start an analysis without creating any ratios on the Grouping & Quantification page.

Annotation Server

Opens the Annotation Server page to specify the name and path of the Annotations Server used by the Protein Annotation node in the consensus workflow.

Default: https://proteinannotationservice.thermofisher.com