Shortcut menu commands in the Volcano Plots view - Proteome Discoverer Software - Shortcut menu commands in the Volcano Plots view - Proteome Discoverer Software

Shortcut menu commands in the Volcano Plots view - Proteome Discoverer Software - Shortcut menu commands in the Volcano Plots view - Proteome Discoverer Software - Proteome Discoverer Software

Proteome Discoverer 3.1 User Guide

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Ardia Platform > Software > Proteome Discoverer Software

Desktop Software > Proteome Discoverer Software

Document Type

User Guide

Software version

3.1

The following table describes the commands in the shortcut menu of the Volcano Plots view.

Commands in the shortcut menu of the Volcano Plots view
Command or Option	Description
Show Position Tooltips	Displays the following information: number, number: Log₂ ratio Pnumber: P value MW number [kDa]: Molecular weight of the protein, in kilodaltons calc. PI=number: Isoelectric point of the protein #Peptides=number: Number of unique peptides #PSMs=number: Number of peptide spectrum matches #AAs=number: Number of amino acids in the protein
Zoom Out	Reduces the view.
Undo All Zoom/Pan	Returns the volcano plot to the default view.
Copy	Copies the data in the plot view.
Image	Copies the data in the plot view as an image.
Points	Copies the data in the plot view as text.
Point Details	Copies all items on the selected page (Proteins or Peptide Groups) into a CSV-format text file.
Export	Exports the data in the plot view to a file.
Image As	Exports the data in the plot view as an image in an Enhanced Metafile (EMF) file.
Points As	Exports the data in the plot view as text in a TXT file.
Point Details As	Exports all items on the selected page (Proteins or Peptide Groups) into a CSV-format text file.
Show Legend	Displays the meaning of the colors of groups of proteins or peptide groups.
Check Point	Selects a data point in the plot view, colors the point blue, and selects the checkbox of the corresponding protein or peptide group in the Checked column of the result report.
Uncheck Point	Clears a data point in the plot view and returns the point to its original color in the plot. In the Checked column of the result report, the application clears the checkbox of the corresponding protein or peptide group.
Check All Visible Points	Selects all data points in the plot view, colors the points blue, and selects the checkboxes of the corresponding proteins or peptide groups in the Checked column of the result report.
Uncheck All Visible Points	Clears all data points in the plot view, returns the points to their original colors, and re-displays the legend. In the Checked column of the result report, the application clears the checkboxes of the corresponding proteins or peptide groups.