The following figure shows the grouped and ungrouped abundances of a selected protein. The x axis of the chart shows the quantification channels, and the y axis shows the abundance of the selected protein for the quantification channel, defined by arbitrary units. In this example, the quantification channel names are replaced by the names of the study factors. An optional legend at the bottom displays the grouped and ungrouped abundances.
Procedure
- Select the Proteins or Peptide Groups tab in the result file.
- Select the row of the protein or peptide group that interests you.
- Choose View > Quan Channel Values, or select Quan Channel Values
. - The following figure shows the grouped and ungrouped abundances on the Proteins page of the result file for precursor ion quantification.
Quantification Channel Values chart showing grouped and ungrouped abundances on Proteins page for precursor ion quantification
The x axis of the chart shows the quantification channels, and the y axis shows scaled abundance or summed S/N values, depending on whether you chose scaling in the Precursor Ions Quantifier node.
Task | Procedure |
|---|---|
Display the legend | Right-click the Quan Channel Values pane and choose Show Legend. |
Display grouped abundances | Right-click and choose Show Grouped Abundances. |
Display ungrouped abundances | Right-click and choose Show Ungrouped Abundances. |