Display the Quantification Channel Values chart for proteins and peptide groups for reporter ion quantification - Proteome Discoverer Software - Display the Quantification Channel Values chart for proteins and peptide groups for reporter ion quantification - Proteome Discoverer Software - Proteome Discoverer Software

This chart shows the grouped and ungrouped abundances of a selected protein. In this example, the quantification channels are labeled as study factors rather than as reporter ion masses. Error bars denoting the standard error are displayed above the blue bar that shows the average abundance of the ungrouped abundances. An optional legend at the bottom displays the grouped and ungrouped abundances.

The x axis of the chart shows the names of the quantification channels, and the y axis shows the scaled abundance or summed S/N values, depending on whether you chose scaling in the Reporter Ions Quantifier node.