Procedure
- In the Protein Identification Details view, select the Coverage tab.
- When the site probability scores are available (that is, when you included the ptmRS node in the processing workflow), the application color-codes the scores.
- From the Threshold list in the PTM Site Probabilities area, select the category of probability for a modification to occur on a sequence site.
- For example, when you choose 25 from the Threshold list, the Protein Identification Details view displays modifications that have a low (25–100%) probability of occurrence on a site.
NOTE
The application does not display modifications with less than a 25% chance of occurring on a site.
Protein Identification Details view showing modifications with a low probability of occurring on a site - To display only those modifications with a very high probability (99–100%) of a modification occurring on a site, select 99 from the Threshold list.
Protein Identification Details view showing modifications with a high probability of occurring on a site