The following table describes the Export Annotated Spectra dialog box parameters.

Export Annotated Spectra dialog box parameters

Command or Option

Description

Destination

Specifies the path and name of the PDF file where you want to save the exported annotated spectra.

Items To Be Exported

  • From PSMs: Exports the annotated spectra of the PSMs.
  • From Peptide Groups: Exports the annotated spectra of all PSMs for all peptide groups. This option is only available if the result file includes peptide groups.
  • From Proteins: Exports all PSMs of the proteins.
  • Checked Items Only: Exports only the items that you selected.

Options/Image Size

Specifies the width and height of the spectra.

  • Width: Specifies the width of the spectra, in centimeters. Default: 16.0
  • Height: Specifies the height of the spectra, in centimeters. Default: 8.00

Fragment Match Options

Opens the Options dialog box. For information, see Set global default fragment match options.

Export

Saves the selected annotated spectra in the specified HTML file.

Close

Closes the dialog box without exporting any annotated spectra or applying any of the selected options.