The following figure shows a sample excerpt from a PSMs table in an output HTML file, which shows the annotated spectra for all PSMs.

Peptides table in the HTML file with annotated spectra for all PSMs

The following figure shows a sample excerpt of an HTML file, which shows annotated spectra for the PSMs belonging to selected proteins.

Peptides table in the HTML file with annotated spectra for PSMs belonging to selected proteins

The following figure shows a sample excerpt of an HTML file, which shows the annotated spectra of the peptides of selected peptide groups.

Peptides table in the HTML file with annotated spectra of the PSMs of selected peptide groups

The following figure shows the search summary in the HTML file.

Search summary in the HTML file
Search summary in the HTML file

The following figure gives an example of the output annotated spectrum in the HTML file.

Annotated spectrum linked to the HTML file
Annotated spectrum linked to the HTML file

The annotation includes the following information:

  • The path and name of the raw data file
  • The numbers of any grouped spectra
  • The retention time of the precursor ion, in minutes
  • The type of mass spectrometer used to create the data in the raw data file
  • The fragmentation method used
  • The charge state of the precursor ion
  • The mass-to-charge ratio (m/z) of the precursor ion, in daltons
  • The protonated monoisotopic mass (MH+), in daltons
  • The match tolerance

The following figure gives an example of the output peak list in the HTML file.

Peak list linked to the HTML file
Peak list linked to the HTML file