These topics list the parameters for each node used in the processing workflows. The nodes are grouped in the order that they appear in the Parameters pane.
You can display all the workflow parameters available for a node by clicking Show Advanced Parameters.
- Data Input nodes
- Spectrum Retrieval nodes
- Feature Detection & Quantification nodes
- Spectrum Processing nodes
- Spectrum Filter nodes
- Sequence Database Search nodes
- Spectral Library Search nodes
- PSM Validation nodes
- PTM Analysis nodes
- Data Export nodes
- Post-Processing Nodes
For information about the nodes in the consensus workflow, see Consensus workflow editor nodes reference.
For information about any administrative settings for workflow nodes, see Configuring Proteome Discoverer.