The following topics explain how to ensure that your quantification results are optimal and can be easily interpreted. They also describe aspects of quantification that are common to reporter ion, label-free, and precursor ion quantification.
- Calculate p-values and adjusted p-values for quantification results
- Impute missing values
- Treating missing quantification channels for quantification methods
- Understanding how quantification results are calculated
- Understanding how quantification methods work in Proteome Discoverer
- Troubleshooting quantification
- Filtering reporter ion quantification data with signal-to-noise values
- Identifying isotope patterns in precursor ion quantification
- Understanding how the CHIMERYS algorithm quantifies data produced by Data Independent Acquisition