The Administration menu contains the commands described in the following table.
Command | Function | Shortcut | Toolbar icon |
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Administration > Show Job Queue | Displays the job queue and the status of current searches. For more information, see Job queue. | CTRL+J |
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Administration > Maintain FASTA Files | Opens the FASTA Files view on the Administration page so that you can add, remove, and modify FASTA files. For more information about FASTA files, see Set the location for temporary files. |
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Administration > Maintain FASTA Indexes | Opens the FASTA Indexes view on the Administration page so that you can add and remove FASTA indexes and change their location. For information, see Managing FASTA indexes. |
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Administration > Maintain FASTA Parsing Rules | Opens the FASTA Parsing Rules view (see FASTA Parsing Rules view) so that you can add or change FASTA parsing rules. For information, see Add or modify FASTA parsing rules. |
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Administration > Maintain Spectrum Libraries | Opens the Spectrum Libraries view on the Administration page so that you can see all the spectrum libraries that you have downloaded from the NIST or the Peptide Atlas home page. For information on downloading spectrum libraries, see Working with spectrum library searches. |
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Administration > Maintain Chemical Modifications | Opens the Chemical Modifications view on the Administration page so that you can activate or deactivate the available chemical modifications to be used in the search process. You can also create new modifications or edit existing modifications. For information about using the Chemical Modifications view, see Chemical modifications. |
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Administration > Maintain Cleavage Reagents | Opens the Cleavage Reagents view so that you can add, remove, and modify cleavage reagents. For more information, see Customizing cleavage reagents. |
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Administration > Maintain Annotation Aspects | Opens the Annotation Aspects view so that you can display and define annotation aspects. For more information, see Work with Annotation Aspects. |
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Administration > Maintain Quantification Methods | Opens the Quantification Methods view so that you can add, change, remove, import, or export a quantification method. For information about these functions, see Working with quantification methods. |
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Administration > Manage Licenses | Opens the Licenses view on the Administration page so that you can add new licenses. For more information, see Managing the application licenses. |
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Administration > Configuration | Opens the Configuration view on the Administration page so that you can configure the parameters used in all searches. For more information, see Administration Page Configuration parameters. |
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