The toolbar is directly below the menu bar.

Proteome Discoverer toolbar icons

Toolbar icon

Function

Menu equivalent

Keyboard Shortcut

Opens the New Study and Analysis dialog box for creating a new study.

File > New Study/Analysis

 

Opens the Open Study dialog box for selecting an existing study.

File > Open Study

 

Opens a result report.

 

File > Open Result

 

Saves all the changes that you made to a report or a study.

File > Save

CTRL+S

Saves all open studies in the application.

 

File > Save All

CTRL+SHIFT+S

Opens the Proteome Discoverer Start Page.

View > Start Page

 

Displays the Layout Selector area.

 

View > Layout Selector

CTRL+L

Displays the Custom Tags Editor.

 

View > Custom Tags Editor

CTRL+SHIFT+C

Opens the Display Filter pane for selecting display filters to filter data in the result file.

View > Display Filter

CTRL+F

 

Displays the Report Item Distribution chart.

View > Distribution Charts

CTRL+SHIFT+D

Displays maps of the chemical pathways identified by the Wiki Pathways database.

View > Pathway Map

 

Displays Enrichment Chart View

 

View > Enrichment Chart

 

Displays the Protein Identification Details view when you select a protein row. Displays the Peptide Spectrum Match Identification Details view when you select a peptide row.

View > Protein Details or Peptide Spectrum Match Details

CTRL+D

Displays the Chromatogram Traces view.

View > Chromatogram Traces View

CTRL+SHIFT+T

Displays the Fragment Match Spectrum view.

View > Fragment Match Spectrum

CTRL+SHIFT+F

Displays the Precursor Isotope Pattern view.

View > Precursor Isotope Pattern

CTRL+SHIFT+P

Displays the Sequence Comparison chart.

View > Sequence Comparison

 

Displays the Quantification Ratio Distributions chart.

View > Quan Ratio Distributions

CTRL+SHIFT+R

Displays the Trend chart.

View > Trend Chart

 

Displays the Quantification Channel Values chart.

View > Values

CTRL+SHIFT+N

Displays the Quantification Spectrum chart.

View > Quantification Spectrum

CTRL+SHIFT+Q

Displays the Result Summaries view.

 

View > Summaries

CTRL+F

Opens the Workflow Editor for loading, editing, and saving workflow templates.

View > Workflow Editor

 

Displays the job queue.

Administration > Show Job Queue

CTRL+J

Opens the FASTA Files view for adding, removing, and modifying FASTA files.

Administration > Maintain FASTA Files

 

Opens the Chemical Modifications view to activate or deactivate available chemical modifications that are used in the search process, create new modifications, or edit existing modifications.

Administration > Maintain Chemical Modifications

 

Opens the Quantification Methods view, which lists all of the available methods for both precursor ion and reporter ion quantification.

Administration > Maintain Quantification Methods

 

For information about customizing the toolbar, see Customizing the toolbar and Customize toolbar icons, fonts, and tooltips display.

NOTE

If you have the ProSightPD application, you may see additional icons in the Proteome Discoverer toolbar.