When you use the Protein Annotation node in a consensus workflow to generate a result file, you can display maps of the chemical pathways identified for a protein by the Reactome pathway database and the Wiki Pathways database.

Procedure

  1. Open the result file.
  2. Select the Proteins tab.
  3. Select the protein of interest on the Proteins page.
  4. Select View > Pathway Map, or select Show the Biochemical Pathway Map in the toolbar.
  5. The Pathway Map view opens. On the left is a list of all pathways assigned to the protein, and on the right is a pane showing the selected pathway.
  6. Pathway Map view showing the selected biochemical pathway from the Wiki PATHWAY database
  7. (Optional) Select a pathway identification in the left pane.
  8. The right pane displays the selected pathway.