The following table lists the parameters in the Enrichment Chart view.

Enrichment Chart view parameters

Parameter

Description

Annotation Source

Includes the following types of annotations to display in the chart:

  • Gene Ontology – All Terms
  • Gene Ontology – Cellular Component
  • Gene Ontology – Biological Process
  • Gene Ontology – Molecular Function
  • Reactome Pathways
  • Wikipathways
  • Pfam

Calculation

Choose between:

  • Enrichment – Enriched annotations are unlikely to be chosen at random in the selected proteins.
  • Depletion – Depleted annotations are unlikely to be randomly missing from the list of proteins.

Background

Choose between:

  • Identified Proteins – the proteins identified in the current run.
  • Identifiable Proteins – the full list of proteins in the target databases. In this case, the database that was chosen in the Protein Annotation node is used for the background.

p-value threshold

Type a significance threshold to accept a given annotation as significantly enriched or depleted.