You can use the parameter file exported in the Daemon utility to call the application from the Xcalibur data system. You can start the utility by adding a parameter file to the processing method specified in the Xcalibur sequence.
To run the utility from the Xcalibur data system, follow these topics:
- Overview of the Proteome Discoverer Daemon Analysis
- Prepare to run the Daemon utility in Xcalibur
- Run the Daemon utility from a parameter file
- Create a processing method that calls the Daemon utility from the Xcalibur data system
- By File processing with a processing method that calls the Daemon utility
- By File processing with multiple processing methods
- Process MudPIT samples by using a processing method