You can save the current filter set as a new .filterSet file, which is saved in the following directory:

C:\Users\Public\Public Documents\Thermo\Proteome Discoverer 3.1\
Common Templates\FilterSets

You can apply this filter set as a template when you generate other result files by using the Display Settings node.

Procedure

  1. Open the result file and set the filters in the Display Filter pane (see Create a display filter).
  2. Rename the filter set.
  3. Select File > Save.