Interpreting search results with the results file - Proteome Discoverer Software - Interpreting search results with the results file - Proteome Discoverer Software - Proteome Discoverer Software

This chapter describes what results files are and explains what information you can find on each page of the report.

• The result file and the .pdResultView file
• The Proteins page
• The Protein Groups page
• The Peptide Groups page
• The PSMs page
• The MS/MS Spectrum Info page
• The Quan Spectra page
• The Input Files page
• The Specialized Traces page
• The Study Information page
• The Modification Sites page
• The Peptide Isoforms page
• The Consensus Features page
• The LCMS Features page
• The Result Statistics page
• The Mass Recalibrations page
• The Decoy Protein Groups page
• The Decoy Proteins page
• The Decoy Peptide Groups page
• The Decoy PSMs page
• The Annotated Modifications page, Found Modifications page, and Unknown Modifications page
• The Amino Acids page
• Custom color-coded tags for result table entries

For information on the views and charts that help you interpret the results, see Interpreting search results with views and charts.

For information on the views and charts that help you interpret quantification results, see Interpreting quantitative results.

For information about filtering the search results, see Filtering results data.