The following table lists the parameter that you can use to configure the MSF Files node.

MSF Files node configuration parameter

Parameter

Definition

PSM Scores

Specifies a list of score types in the following format: search_node_name:score_name.

The defaults are as follows:

  • Mascot: Ions Score
  • Sequest HT: XCorr
  • MSPepSearch: dot score
  • MSPepSearch: rev-dot score
  • MSPepSearch: MSPepSearch score
  • MS Amanda: Amanda score