The following topics describe the administration tasks that you must perform before creating a study in the Proteome Discoverer application:
- Managing the application licenses
- Set the location for temporary files
- Specify the number of workflows to execute in parallel
- Configure Mascot search engine parameters
- Configure the CHIMERYS search engine
- Using FASTA databases
- Working with spectrum library searches
- Chemical modifications
- Customizing cleavage reagents
- Work with Annotation Aspects
- CHIMERYS Inclusion Files
- Quantification methods and quantification channels
- Working with quantification methods
- Configuring General Preferences