The following table contains known defects in the software, categorized by software section, with a brief abstract and information related to each defect’s severity and risk. The Item ID is the internal number assigned to each issue. Product management assesses risk, which can differ significantly from the reported severity.

Software section

Severity

Abstract

Risk

Item ID

XlinkX

High

Crosslinking: XlinkX open search still errors.

High

403291

XlinkX

High

Crosslinking: XL cannot perform the analysis with the DSSO raw file acquired by the Astral instrument.

High

418219

PD powered by Ardia

High

PD server crashes after a network loss.

Low

363879

CHIMERYS

High

A queued job was started in the CHIMERYS server but its analysis fails when the PC automatically restarts for Windows updates.

Low

387738

TMT

High

TMT processing workflow fails for specific raw files.

Low

406083

XlinkX

Medium

XL Sequence not the same between the Crosslinks table and its associated CSMs table.

Low

268036

Spectrum Grouper

Medium

There seems to be a performance issue in Spectrum Grouper node.

Low

336580

Heat map

Medium

Out-of-memory in Heatmap.

Low

400330

LFQ

Medium

Peptide abundances are changed after PD3.1.0.475.

Low

402644

PD powered by Ardia

Medium

Importing a study from .csv does not work when remote files are included.

Low

403802

CHIMERYS

Medium

Large Datasets: CHIMERYS analysis fails with local fractions if the input and processing mode is set to One job for All files.

Low

405844

Precursor Detector

Medium

Protein Score is calculated wrong when using precursor detector node.

Low

408138

Mascot

Medium

Context Help should work in the Mascot Communication tester the same as it works in the CHIMERYS Communication tester.

Low

411174

Daemon

Medium

Cannot run CHIMERYS Ardia workflows using the Daemon utility because the identity token is missing.

Low

412435

PD powered by Ardia

Medium

Inconsistency between processing statistics and job queue.

Low

424170

Fragment Match Spectrum

Medium

The scale of x-axis of the spectrum matching was much bigger than the fragments ion coverage area under both Reference Spectrum checked and unchecked.

Low

266072

XlinkX

Low

Noncleavable_fast analysis templates do not work in PD 3.1.

Low

427509

Thirdparty installer

Low

The release notes link is not working in the thirdparty installer.

Low

427551