The following table lists defects that were resolved between Proteome Discoverer 3.0 and Proteome Discoverer 3.1. The table excludes Help issues and any cosmetic fixes. In some cases the Abstract has been amended or extended from the original to better describe the reported issue. Both an engineering fix and follow-up testing (verified by our product evaluation department) have resolved each of these issues.
Item ID | Software section | Abstract |
|---|---|---|
249161 | CHIMERYS | CHIMERYS search failed because the percolator output cannot be obtained from CHIMERYS. |
309299 | Percolator | Percolator node failed in a PWF because the root element is missing. |
336547 | Minora | Minora node crashes in some cases (when a RAW file is registered internally with a different file size). |
400386 | Minora | Minora crashes when processing multiple RAW files in parallel. |
423780 | Data distributions | Found in distributions does not show the correct label for low confident PSMs. |
309504 | Sequest HT | Sequest HT crashes if an amino acid is specified twice in the cleavage site description of an enzyme. |
324577 | Statistics | User can create inverse ratios of each other. |
281300 | Modification editor | Not all the Neutral Losses and Diagnostic Ions should be deleted after importing the Neutral Losses and Diagnostic Ions from a .xml file. |
357141 | Comet | There is no annotation on the Fragment Spectrum plot. |
359125 | CHIMERYS | I/L problem with CHIMERYS. |
361249 | CHIMERYS | Enhancement request: Give users a clear warning that tells them to re-login to the CHIMERYS server after being logged into the server for more than 60 days. The user can do this either at the parameter validation stage or in Job queue. |
371895 | Fragment spectrum | The default color of 1st spectrum in the mirror plot is yellow. |
308331 | Spectrum Files RC | Enhancement request: Show all of the default setting in Static Modifications for the Spectrum files RC node without needing to open the Show Advanced Parameters. |
309247 | Log files | Operating System ID in Logfiles points to an old Win8 version. |
341275 | FASTA databases | Enhancement request: Let users update multiple databases with one click. |
348792 | Summary information | A max Mass of a Raw file is not correct in the Input files table of a pdResult. |