You already selected a consensus workflow in the New Study and Analysis dialog box. In this section, you configure some settings in the workflow nodes.
Procedure
- In the Analysis pane, select Edit on the Consensus Step.
- In the Workflow Tree pane, select the Precursor Ions Quantifier node.
- Change the Reject Quan Results with Missing Values parameter to True.
NOTE
This sample was set up to always have a 1:2:4 ratio for lysine and a 4:2:1 ratio for arginine; it is expected that all peptides will have quantitative values for each channel. For real biological samples, keep the default value, False.
- In the Protein Annotation Node, select Escherichia coli (strain K12) (sp_canonical TaxID=83333_and_subtaxonomies) (v2022-04-30).fasta in the Protein Database parameter.