You can use this node's parameter setting cutoff to include search results in the pdResult report.
The FDR calculations are implemented as described in the 2019 Mol Cell Proteomics article, “Accurate Estimation of Context–Dependent False Discovery Rates in Top–Down Proteomics,” by LeDuc et. al. For more information, go to https://pubmed.ncbi.nlm.nih.gov/30647073/.
The following table lists the node parameters.
Parameter | Description |
|---|---|
1. FDR | |
FDR cutoff | Enter a number that search results must exceed to be included in the pdResult report. |
2. tdReport | |
Generate tdReport | Generate a tdReport from the search results. The TD Viewer application can open the tdReport. |