Collect samples in high density polyethylene containers that have been thoroughly cleaned with deionized water. Do not clean containers with strong acids or detergents because these can leave traces of ions on the container walls. Remnant ions may interfere with analysis.

If samples will not be analyzed on the day of collection, filter them through clean 0.45 µm filters immediately after collection; otherwise, bacteria in the samples may cause the ionic concentrations to change over time. Refrigerating the samples at 4°C (39°F) will reduce, but not eliminate, bacterial growth.

Analyze samples containing nitrite or sulfite as soon as possible. Nitrite oxidizes to nitrate, and sulfite to sulfate, thus increasing the measured concentrations of these ions in the sample. In general, samples that do not contain nitrite or sulfite can be refrigerated for at least one week with no significant changes in anion concentrations.