When you convert legacy data, the following occurs for processing methods:

  • The BioPharma Finder application does not migrate legacy default methods, only custom methods. The application automatically installs new default methods. It displays the migrated methods in the Processing Methods pane on the Peptide Mapping Analysis, Oligonucleotide Analysis, Intact Mass Analysis page, or Top Down Analysis pages.
  • Versions 1.0 and 2.0 of the Thermo Scientificâ„¢ Protein Deconvolution application did not include the Rel. Intensity Threshold (%) parameter, so a method created from these applications did not store this value. To use this legacy method for processing, you must first manually enter the appropriate Rel. Intensity Threshold (%) value on the Parameters > Component Detection page.
  • The application does not migrate the values for the RT Range parameter. The values displayed in the header of the source spectrum plot and the RT Range column of the results tables differ from these values displayed in the legacy application. You must manually specify the appropriate RT Range values in the method. Save the method and then use it for processing.