On the Modification Results page, the Modification Plot pane displays the percent abundance values for modifications that you select in the Modification Results table.

Prerequisites

  1. You have loaded the experiment results are viewing the Modification Summary page under the Mapping tab.

Procedure

  1. On the Modification Summary page, in the lower table of the Modification Results table, select the checkbox for one or more modification rows.
  2. image/svg+xml Modifcation names legend Conditions and RAW file names
    Modification plot, shown for a peptide mapping analysis experiment
  3. The Modification plot updates and displays the default abundance percentages for the modifications selected in the Modification Results table, grouped by the conditions and corresponding raw data files loaded for the experiment.
  4. The percentage values in the plot are from the % Abundance raw_data_ file_name columns in the table.
  5. The plot displays each modification in a different color according to the legend in the upper right corner of the table.
  6. (Optional) If you recalculated custom abundance percentages, view them in the plot by selecting the Custom option in the title bar of the pane.
  7. The plot now uses the abundance percentage values from the Custom % Abundance raw_data_ file_name columns in the table.
  8. If a selected row does not have a value in this column, the Custom option is inactive.
  9. To return to the default abundance percentages for the selected rows, select the Default option in the title bar of the pane.