Appendix: Analysis modes for the mass spectrometer - Ardia Data Viewer - Appendix: Analysis modes for the mass spectrometer - Ardia Data Viewer

Ardia Data Viewer Application User Guide
Product Tree
Ardia Platform > Ardia Core Applications > Ardia Data Viewer
Document Type
User Guide
Software version
1.0
  • Ardia Data Viewer Application User Guide
  • Copyright and trademarks
  • About this documentation
  • Related documentation
  • Special notices
  • Contact us
  • Get Started with the Data Viewer application
  • Open the Data Viewer application
  • Navigate the Data Viewer home page
  • Show or hide the Info Bar
  • Open injections or raw data files
  • Open one or more injections or raw data files from Ardia repository
  • Open one or more injections or raw data files from Data Explorer
  • Display a workspace
  • View or manage an active workspace
  • Save an active workspace
  • Restore a saved workspace
  • Undo and Redo actions in an active workspace
  • Review Chromatographic Data
  • Display a Chromatogram view
  • Display the scan corresponding to a particular RT point
  • Change the zoom level of a Chromatogram view
  • Zoom in using the mouse pointer
  • Zoom in using the zoom range option
  • Modify Chromatogram view
  • Ranges dialog box parameters
  • Add a chromatogram trace
  • Add an extracted ion chromatogram trace using the spectrum view
  • Add a chromatogram trace from the Ranges dialog box
  • Change the injection or raw data file in the Ranges dialog box
  • Delete a trace in the Ranges dialog box
  • Define a chromatogram trace in the Ranges dialog box
  • Detector type
  • Trace type
  • Import a CSV file
  • Display the Peak Detection page
  • Use ICIS peak detection
  • Use Genesis peak detection
  • Peak detection with default values
  • Change the peak detection settings
  • Detection and integration of chromatographic peaks
  • Define the identification parameter
  • Run any of the peak detection algorithms
  • Select the manual noise region
  • Label chromatogram peaks
  • Add peak labels to each detected peak
  • Add the Pharmacopoeia SN labels to each detected peak
  • Specify the format of the RT option
  • Display Peak List view
  • Export Peak List view as a CSV file
  • Export a Chromatogram view
  • Show or hide columns
  • Review Spectral Data
  • Add a Spectrum view
  • Link a spectrum to a chromatogram trace
  • Change the zoom level in a Spectrum view
  • Average a spectrum
  • Average a spectrum from the Processing toolbar
  • Average a spectrum from the Ellipsis menu
  • Enter the RT range or scan range
  • Select the RT range using the cursor
  • Edit the averaging range from the dialog box
  • Label spectrum peaks
  • Add spectrum labels
  • Add Precursor flag label
  • Add nearby precursor marker
  • APD data label
  • Add an APD data label
  • Open data-dependent scans from the precursor markers
  • Export a Spectrum view as an image
  • Export a Spectrum view to the clipboard
  • View mass precision
  • Appendix: Mass spectra
  • Base peak
  • Neutral losses
  • Ionization modes
  • Ionization modes of LC/MS instruments
  • Ionization modes of GC/MS instruments
  • Adduct formation
  • Isotopes
  • Isotope patterns in high-resolution data
  • Appendix: Analysis modes for the mass spectrometer
  • Full scan
  • Selected ion monitoring
  • MS/MS
  • MSn
  • Selected reaction monitoring
  • Parallel reaction monitoring
  • Appendix: ICIS S/N estimation
  • INCOS algorithm
  • Repetitive algorithm
  • Baseline in ICIS
  • Appendix: Pharmocopoeia S/N
  • Peak-to-peak method
  • Multiple of time span method
  • Appendix: Scan filters and scan headers
  • Scan filter format
  • Spectrum scan header abbreviations
  • Appendix: Amino Acid residue abbreviations

A Thermo Scientific mass spectrometer has these analysis modes:

  • Full scan
  • Selected ion monitoring
  • MS/MS
  • MSn
  • Selected reaction monitoring
  • Parallel reaction monitoring
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